• • • Mitchell AV, Wu L , Block CJ, Zhang M, Hackett J, Craig DB, Chen W, Zhao Y, Zhang B, Dang Y, Zhang X, Zhang S, Wang C, Gibson H, Pile LA, Kidder B, Matherly L, Yang Z, Dou Y, Wu G. FOXQ1 recruits the MLL complex to activate transcription of EMT and promote breast cancer metastasis. Nature Communications. 2022 Nov 1;13(1):6548. doi: 10.1038/s41467-022-34239-z. PMID: 36319643
    • He R, Xhabija B, Gopi LK, Kurup JT, Xu Z, Liu Z, Kidder BL. H3K4 demethylase KDM5B regulates cancer cell identity and epigenetic plasticity. Oncogene. 2022 Apr 19. doi: 10.1038/s41388-022-02311-z. Online ahead of print. PMID: 35440714
    • Gopi LK, Kidder BL. Integrative pan cancer analysis reveals epigenomic variation in cancer type and cell specific chromatin domains. Nature Communications. 2021;12(1):1419. doi: 10.1038/s41467-021-21707-1.
    • Kurup JT, Kidder BL. H4K20me3 methyltransferase SUV420H2 shapes the chromatin landscape of pluripotent embryonic stem cells. Development. 2020 Dec 4;147(23):dev188516. doi: 10.1242/dev.188516. PMID: 33144397
    • Zhang Q, Thakur C, Fu Y, Bi Z, Wadgaonkar P, Xu L, Liu Z, Liu W, Wang J, Kidder BL, Chen F. Mdig promotes oncogenic gene expression through antagonizing repressive histone methylation markers. Theranostics. 2020 Jan 1;10(2):602-614. doi: 10.7150/thno.36220. eCollection 2020. PMID: 31903140
    • Xhabija B, Kidder BL. KDM5B is a master regulator of the H3K4-methylome in stem cells, development and cancer. Semin Cancer Biol. 2019 Aug;57:79-85. doi: 10.1016/j.semcancer.2018.11.001. Epub 2018 Nov 16. Review. PMID: 30448242
    • Kurup JT, Campeanu IJ, Kidder BL. Contribution of H3K4 demethylase KDM5B to nucleosome organization in embryonic stem cells revealed by micrococcal nuclease sequencing. Epigenetics Chromatin. 2019 Apr 2;12(1):20. doi: 10.1186/s13072-019-0266-9. PMID: 30940185
    • Rosati R, Polin L, Ducker C, Li J, Bao X, Selvakumar D, Kim S, Xhabija B, Larsen M, McFall T, Huang Y, Kidder BL, Fribley A, Saxton J, Kakuta H, Shaw P, Ratnam M. Strategy for Tumor-Selective Disruption of Androgen Receptor Function in the Spectrum of Prostate Cancer. Clin Cancer Res. 2018 Sep 5. doi: 10.1158/1078-0432.CCR-18-0982. [Epub ahead of print]. PMID: 30185422
    • Kurup JT, Kidder BL. Identification of H4K20me3- and H3K4me3-associated RNAs using CARIP-Seq expands the transcriptional and epigenetic networks of embryonic stem cells. J Biol Chem. 2018 Sep 28;293(39):15120-15135. doi: 10.1074/jbc.RA118.004974. Epub 2018 Aug 16. PMID: 30115682
    • He R, Kidder BL. Culture of haploid blastocysts in FGF4 favors the derivation of epiblast stem cells with a primed epigenetic and transcriptional landscape. Sci Rep. 2018 Jul 17;8(1):10775. doi: 10.1038/s41598-018-29074-6. PMID: 30018329
    • Xu J, Kidder BL. H4K20me3 co-localizes with activating histone modifications at transcriptionally dynamic regions in embryonic stem cells. BMC Genomics. 2018 Jul 3;19(1):514. doi: 10.1186/s12864-018-4886-4. PMID: 29969988
    • Kidder BL. CARIP-Seq and ChIP-Seq: Methods to Identify Chromatin-Associated RNAs and Protein-DNA Interactions in Embryonic Stem Cells. J Vis Exp. 2018 May 25;(135). doi: 10.3791/57481. PMID: 29748167
    • Xu J, Kidder BL. KDM5B decommissions the H3K4 methylation landscape of self-renewal genes during trophoblast stem cell differentiation. Biol Open. 2018 May 10;7(5). pii: bio031245. doi: 10.1242/bio.031245. PMID: 29748167
    • Vizcardo R, Klemen ND, Islam SMR, Gurusamy D, Tamaoki N, Yamada D, Koseki H, Kidder BL, Yu Z, Jia L, Henning AN, Good ML, Bosch-Marce M, Maeda T, Liu C, Abdullaev Z, Pack S, Palmer DC, Stroncek DF, Ito F, Flomerfelt FA, Kruhlak MJ, Restifo NP. Generation of Tumor Antigen-Specific iPSC-Derived Thymic Emigrants Using a 3D Thymic Culture System. CELL REPORTS. 2018 Mar 20;22(12):3175-3190. doi: 10.1016/j.celrep.2018.02.087. PMID: 29562175
    • He R, Xhabija B, Al-Qanber B, Kidder BL. OCT4 supports extended LIF-independent self-renewal and maintenance of transcriptional and epigenetic networks in embryonic stem cells. SCIENTIFIC REPORTS 2017 Nov 27;7(1):16360. doi: 10.1038/s41598-017-16611-y. PMID: 29180818
    • Kidder BL*, He R, Wangsa D, Padilla-Nash HM, Bernardo MM, Sheng S, Ried T, Zhao K*. SMYD5 controls heterochromatin and chromosome integrity during embryonic stem cell differentiation. CANCER RESEARCH 2017 Sep 26. pii: canres.0828.2017. doi: 10.1158/0008-5472.CAN-17-0828. [Epub ahead of print]. PMID: 28951459. *Corresponding author
    • He R, Kidder BL*. H3K4 demethylase KDM5B regulates global dynamics of transcription elongation and alternative splicing in embryonic stem cells. NUCLEIC ACIDS RESEARCH 2017 April 10. PMID: 28402433 https://doi.org/10.1093/nar/gkx251 . *Corresponding author
    • Kidder BL*, Hu G, Cui K, Zhao K*. SMYD5 regulates H4K20me3-marked heterochromatin to safeguard ES cell self-renewal and prevent spurious differentiation. EPIGENETICS AND CHROMATIN 2017 Feb 23;10:8. doi: 10.1186/s13072-017-0115-7. PMID: 28250819 *Co-corresponding authors
    • Rosati R, Patki M, Chari V, Dakshnamurthy S, McFall T, Saxton J, Kidder BL, Shaw PE, Ratnam M. The Amino-terminal Domain of the Androgen Receptor Co-opts Extracellular Signal-regulated Kinase (ERK) Docking Sites in ELK1 Protein to Induce Sustained Gene Activation That Supports Prostate Cancer Cell Growth. J Biol Chem. 2016 Dec 9;291(50):25983-25998. Epub 2016 Oct 28. PMID: 27793987
    • Kidder BL*, Hu G, Zhao K*. KDM5B focuses H3K4 methylation near promoters and enhancers during embryonic stem cell self-renewal and differentiation. GENOME BIOLOGY 2014 Feb 4;15(2):R32 (Epub). PMID: 24495580 *Co-corresponding authors
    • Kidder BL*, Hu G, Yu Z, Liu C, Zhao K*. Extended self-renewal and accelerated reprogramming in the absence of Kdm5b. MOLECULAR AND CELLULAR BIOLOGY 2013 Dec;33(24):4793-810. PMID: 24100015 *Co-corresponding authors
      
    • Kidder BL*, Hu G, Zhao K*. ChIP-Seq: technical considerations for obtaining high quality data. NATURE IMMUNOLOGY 2011 Sep 20;12(10):918-22. PMID: 21934668 *Co-corresponding authors
    • Kidder BL*, Palmer S. HDAC1 regulates pluripotency and lineage specific transcriptional networks in embryonic and trophoblast stem cells. NUCLEIC ACIDS RESEARCH 2012 Apr;40(7):2925-39. PMID: 22156375 *Corresponding author
    • Kidder BL*, Palmer S. Examination of transcriptional networks reveals an important role for TCFAP2C, SMARCA4, and EOMES in trophoblast stem cell maintenance. GENOME RESEARCH 2010 Apr;20(4):458-72. PMID: 20176728 *Corresponding author
    • Kidder BL, Palmer S, Knott JG. SWI/SNF-Brg1 regulates self-renewal and occupies core pluripotency-related genes in embryonic stem cells. STEM CELLS 2009 FEB; 27(2):317-28. PMID: 19056910
    • Kidder BL*, Yang J, Palmer S. Stat3 and c-Myc genome-wide promoter occupancy in embryonic stem cells. PLOS ONE. 2008;3(12):e3932. PMID: 19079543 *Corresponding author
    • Kidder BL, Oseth L, Miller SC, Hirsch B, Verfaillie C, Coucouvanis E. Embryonic stem cells contribute to mouse chimeras in the absence of detetable cell fusion. CLONING STEM CELLS 10 (2): 231-248 JUN 2008. PMID: 18338954
    • Ulloa-Montoya F*, Kidder BL*, Pauwelyn K, Chase L, Luttun A, Crabbe A, Geraerts M, Sharov AA, Piao Y, Ko MS, Hu WS, Verfaillie CM. Comparative transcriptome analysis of embryonic and adult stem cells with extended and limited differentiation capacity. GENOME BIOLOGY 8 (8): R163 2007. PMID: 17683608 *contributed equally
    • Chase LG, Ulloa-Montoya F, Kidder BL, Verfaillie C. Islet-derived fibroblast-like cells are not derived via endoderm-mesoderm transition from Pdx-1 or Insulin positive cells. DIABETES 56 (1): 3-7 JAN 2007. PMID: 17110468
    • Hoffman MP, Kidder BL, Steinberg ZL, Lakhani S, Ho S, Kleinman HK, Larsen M. Gene expression profiles of mouse submandibular gland development: FGFR1 regulates branching morphogenesis in vitro through BMP- and FGF-dependent mechanisms. DEVELOPMENT 129 (24): 5767-5778 DEC 2002. PMID: 12421715

Book Editorships

• • • Kidder BL, Editor, Stem Cell Transcriptional Networks: Methods and Protocols, METHODS IN MOLECULAR BIOLOGY, January, 2020. ISBN 978-1-0716-0301-7 f. https://www.springer.com/us/book/9781071603000 ; Amazon
    • Kidder BL, Editor, Stem Cell Transcriptional Networks: Methods and Protocols, METHODS IN MOLECULAR BIOLOGY, April, 2014. ISBN: 978-1-4939-0511-9 (Print) 978-1-4939-0512-6 (Online) http://www.springer.com/life+sciences/cell+biology/book/978-1-4939-0511-9

Book Chapters

• • Kidder BL. Direct Reprogramming of Mouse Embryonic Fibroblasts to Induced Trophoblast Stem Cells. METHODS IN MOLECULAR BIOLOGY. 2020;2117:285-292. doi: 10.1007/978-1-0716-0301-7_18. PMID: 31960387
  • Kidder BL. Derivation of Maternal Epiblast Stem Cells from Haploid Embryos. METHODS IN MOLECULAR BIOLOGY. 2020;2117:219-227. doi: 10.1007/978-1-0716-0301-7_12. PMID: 31960381
  • Kidder BL. Simultaneous Derivation of Embryonic and Trophoblast Stem Cells from Mouse Blastocysts. METHODS IN MOLECULAR BIOLOGY. 2020;2117:235-241. doi: 10.1007/978-1-0716-0301-7_14. PMID: 31960383
  • Kidder BL. Derivation of LIF-Independent Embryonic Stem Cells Using Inducible OCT4 Expression. METHODS IN MOLECULAR BIOLOGY. 2020;2117:229-234.doi: 10.1007/978-1-0716-0301-7_13. PMID: 31960382
  • Kidder BL*, Zhao K. Efficient library preparation for next-generation sequencing analysis of genome-wide epigenetic and transcriptional landscapes in embryonic stem cells. METHODS IN MOLECULAR BIOLOGY. 2014;1150:3-20. doi:10.1007/978-1-4939-0512-6_1.PMID: 24743988 *Corresponding author
  • Kidder BL. Generation of induced pluripotent stem cells using chemical inhibition and three transcription factors. METHODS IN MOLECULAR BIOLOGY. 2014;1150:227-36. doi: 10.1007/978-1-4939-0512-6_15. PMID: 24744002
  • Kidder BL. Derivation and manipulation of trophoblast stem cells from mouse blastocysts. METHODS IN MOLECULAR BIOLOGY, 2014;1150:201-12. doi: 10.1007/978-1-4939-0512-6_13. PMID: 24744000
  • Kidder BL. In vitro maturation and in vitro fertilization of mouse oocytes and preimplantation embryo culture. METHODS IN MOLECULAR BIOLOGY, 2014;1150:191-9. doi: 10.1007/978-1-4939-0512-6_12. PMID: 24743999